PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0024s0710.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family WRKY
Protein Properties Length: 176aa    MW: 19799.5 Da    PI: 10.2812
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0024s0710.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.72e-3290148159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          ldDgy+WrKYGqK vk+s+fprsYYrCt++gC+vkk+v+r+a+d+ vv++tYeg H h+
  Kaladp0024s0710.1.p  90 LDDGYRWRKYGQKAVKNSTFPRSYYRCTHPGCHVKKQVQRTAKDKGVVTTTYEGVHSHP 148
                          59********************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.0E-3375148IPR003657WRKY domain
SuperFamilySSF1182903.27E-2982149IPR003657WRKY domain
PROSITE profilePS5081128.98885150IPR003657WRKY domain
SMARTSM007743.3E-3690149IPR003657WRKY domain
PfamPF031065.2E-2691148IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MLTSHHQDSS PMMFHVTTSA QLPPDVAGEH GQPLMGFRQD DQGLRLGFAA PSQVGQMRML  60
GVNSNCSKRC EKKARKPRYA FQTRSAVDIL DDGYRWRKYG QKAVKNSTFP RSYYRCTHPG  120
CHVKKQVQRT AKDKGVVTTT YEGVHSHPIQ KPADNFESML RQMQIYNPSL NPTSA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2lex_A4e-2780149776Probable WRKY transcription factor 4
1wj2_A4e-2780149776Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012446088.13e-57PREDICTED: probable WRKY transcription factor 75
SwissprotQ9FYA29e-49WRK75_ARATH; Probable WRKY transcription factor 75
TrEMBLA0A059Q9181e-57A0A059Q918_G
STRINGPOPTR_0003s16750.12e-55(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13080.15e-50WRKY DNA-binding protein 75